TAILIEUCHUNG - Culturomics of the plant prokaryotic microbiome and the dawn of plantbased culture media – A review

Improving cultivability of a wider range of bacterial and archaeal community members, living natively in natural environments and within plants, is a prerequisite to better understanding plant-microbiota interactions and their functions in such very complex systems. Sequencing, assembling, and annotation of pure microbial strain genomes provide higher quality data compared to environmental metagenome analyses, and can substantially improve gene and protein database information. Despite the comprehensive knowledge which already was gained using metagenomic and metatranscriptomic methods, there still exists a big gap in understanding in vivo microbial gene functioning in planta, since many differentially expressed genes or gene families are not yet annotated. Here, the progress in culturing procedures for plant microbiota depending on plant-based culture media, and their proficiency in obtaining single prokaryotic isolates of novel and rapidly increasing candidate phyla are reviewed. As well, the great success of culturomics of the human microbiota is considered with the main objective of encouraging microbiologists to continue minimizing the gap between the microbial richness in nature and the number of species in culture, for the benefit of both basic and applied microbiology. | Culturomics of the plant prokaryotic microbiome and the dawn of plantbased culture media – A review

• Sinh học
• Plant microbiome
• Plant based culture media
• Unculturable bacteria
• Phyla Radiation
• The plant prokaryotic microbiome
• Farming practices
• Plant microbiome modulation
• The plant microbiome
• Microbial application
• Halophyte microbiome
• Plant based sea water culture medium
• Lake Mariout
• Alexandria Egypt
• 16S rRNA gene and qPCR Bacillus spp
• Plant–microbe interactions
• Rhizosphere microbiome
• Engineering bacterial competitiveness
• Enhancing crop production
• Shaping rhizosphere microbiome
• BMC Plant Biology
• Rhizosphere soil microbiome
• Rhizosphere metabolome
• Ralstonia solanacearum
• Pathogen abundance
• Co occurrence network
• Genome Biology
• Soil microbiome
• Agricultural system
• Soil environment
• Terrestrial plant life
• Diverse microbial
• BMC Genomics
• Rhizosphere and endosphere microbiome
• Metabarcoding analysis
• Ecosystem functioning
• Emerging technologies
• Magnaporthe oryzae
• Hydrogen cyanide
• Induced systemic resistance
• Rhizospheric microbiome
• BMC Genetics
• Pseudomonas fragi
• β Lactone antibiotics
• Plant growth promoting rhizobacteria