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Special issue paper PAR-3D-BLAST: A parallel tool for searching and aligning protein structures present a parallel tool, parallel 3D-BLAST (PAR- 3D-BLAST), which lists the similar structures to the query protein. Each protein in the result list has a structural similarity score and an alignment to the query structure. The presented tool is implemented to fit both the standalone multi-core computers and clusters of multi-core nodes. The achieved speedup is linear and scalable. | .
