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RNA silencing is an epigenetic inhibition of gene expression and is guided by small interfering RNAs. Sense transgene-induced post-transcriptional gene silencing (S-PTGS) occurs in a portion of a transgenic plant popula-tion. When a sense transgene encoding a tobacco endoplasmic reticulum x-3 fatty acid desaturase (NtFAD3) was introduced into tobacco plants, an S-PTGS line, S44, was obtained. | ỊFEBS Journal Loss of sense transgene-induced post-transcriptional gene silencing by sequential introduction of the same transgene sequences in tobacco Sayaka Hirai1 Kouta Takahashi2 Tomomi Abiko3 and Hiroaki Kodama1 1 Graduate Schoolof Horticulture Chiba University Japan 2 Graduate Schoolof Science and Technology Chiba University Japan 3 Faculty of Horticulture Chiba University Japan Keywords fatty acid desaturase post-transcriptional gene silencing RNA-directed DNA methylation threshold a-linolenic acid Correspondence H. Kodama Graduate Schoolof Horticulture Chiba University 648 Matsudo Chiba 271-8510 Japan Fax 81 43 290 3942 Tel 81 43 290 3942 E-mail kodama@faculty.chiba-u.jp Received 31 October 2009 revised 23 January 2010 accepted 26 January 2010 doi 10.1111 j.1742-4658.2010.07591.x RNA silencing is an epigenetic inhibition of gene expression and is guided by small interfering RNAs. Sense transgene-induced post-transcriptional gene silencing S-PTGS occurs in a portion of a transgenic plant population. When a sense transgene encoding a tobacco endoplasmic reticulum ro-3 fatty acid desaturase NtFAD3 was introduced into tobacco plants an S-PTGS line S44 was obtained. Introduction of another copy of the NtFAD3 transgene into S44 plants caused a phenotypic change from S-PTGS to overexpression. Because this change was associated with the methylation of the promoter sequences of the transgene reduced transcriptional activity may abolish S-PTGS and residual transcription of the sense transgene may account for the overexpression. To clarify whether RNA-directed DNA methylation RdDM can repress the transcriptional activity of the S44 transgene locus we introduced several RdDM constructs targeting the transgene promoter. An RdDM construct harboring a 200-bp-long fragment of promoter sequences efficiently abrogated the generation of NtFAD3 small interfering RNAs in S44 plants. Transcription of the transgene was partially repressed but the resulting NtFAD3 mRNAs .