TAILIEUCHUNG - Genome-wide identification and analysis of growth regulating factor genes in Brachypodium distachyon: In silico approaches

Growth-regulating factor (GRF) genes may play important roles for regulating growth and development in different plant tissues and organs. Here we report the first genome-wide analysis of the GRF gene family in Brachypodium. | Turkish Journal of Biology Turk J Biol (2014) 38: 296-306 © TÜBİTAK doi: Research Article Genome-wide identification and analysis of growth regulating factor genes in Brachypodium distachyon: in silico approaches 1, 2 3 Ertuğrul FİLİZ *, İbrahim KOÇ , Hüseyin TOMBULOĞLU Department of Crop and Animal Production, Çilimli Vocational School, Düzce University, Çilimli, Düzce, Turkey 2 Department of Molecular Biology and Genetics, Faculty of Science, Gebze Institute of Technology, Gebze, Kocaeli, Turkey 3 Department of Biology, Faculty of Science and Arts, Fatih University, Büyükçekmece, İstanbul, Turkey 1 Received: Accepted: Published Online: Printed: Abstract: Growth-regulating factor (GRF) genes may play important roles for regulating growth and development in different plant tissues and organs. Here we report the first genome-wide analysis of the GRF gene family in Brachypodium. We performed in silico comparative analysis of GRF genes, including their structure, duplication in the genome, conserved motifs, and phylogenetic relationship. At the end of the study, 10 BdGRF genes were identified. The highest number of GRF genes was identified on chromosome 1 with 5 members, whereas the least number of genes (only 1 member) was found on chromosomes 2, 4, and 5. Of those, a single segmental duplication was observed in the Brachypodium genome. Average exon and intron numbers were determined as 3 and 4, respectively. Motif analysis showed that WRC and QLQ residues were consistent in all GRF protein sequences. Gene Ontology terms showed that 10 BdGRF proteins grouped in the same biological function, biological process, and cellular component groups. In addition, we compared the new BdGRF proteins with the other monocot and dicot GRF proteins sequences. Phylogenetic analysis revealed that GRF proteins of monocot and dicot species were clustered together in a .

• Sinh học
• Brachypodium distachyon
• Growth regulating factor
• Genome wide analysis
• Growth regulating factor
• GRF interacting factor
• Metabolome analysis
• Plant metabolite extraction
• Drought stress
• Model plant
• BMC Plant Biology
• Salicylic acid
• Jasmonic acid
• Plant disease resistance
• Defense mechanism
• Immunity system
• Marker gene
• Rhizobacterial volatiles
• Root system architecture
• Enterobacter cloacae JM22
• Abiotic stress
• ARF genes
• Phylogenetic relationships
• Oryza sativa
• Various plants
• Stress tolerance
• Plant Biology
• Adventitious root
• Broadly influence plant growth
• Wind stimulation
• Interconnected network
• Phloem xylem organization
• LRR receptor like serine
• BMC Genomics
• Abiotic stresses
• Expression pattern
• Phosphorylation signals
• alcium dependent protein kinases
• Genome wide analyses
• Transcription factor families
• Numerous regulatory processes
• Especially plant growth
• GT transcription factors
• Plant Trihelix transcription factors
• Plant physiology
• Journal of Botany
• B hybridum
• Flow cytometry
• Genome size variation
• Model grass genus
• Brachypodium Bd21
• B granules
• Starch biosynthesis
• Expression profiling
• báo cáo khoa học
• báo cáo y học
• công trình nghiên cứu về y học
• tài liệu về y học
• cách trình bày báo cáo
• Sulfur deficiency
• Gene expression
• In silico
• Plant specific LSU
• Salt stress
• RNA Seq
• RNA Sequencing
• Ubiquitin related proteins
• Cross species meta analysis
• Evolutionary conservation
• Osmotic adjustment
• Puccinia emaculata
• Nonhost resistance
• Switchgrass rust
• Biomass yield
• Gene family
• Abiotic stress response
• Plays pivotal roles